Docking an LABC on Planet Manhattan using the mooring fixture causes me to CTD, and it may or may not also crash the server. When I logged back in both times, it returned me to the previous base I had been on, which was Norfolk Shipyard. I'm not sure if this is an issue with all ships, or just capital ships, or just the LABC, and I'm not sure if it happens on all planets.
EDIT: The same thing just happened to me when I tried to dock with Newark.