Heh, come to Alpha and hit me up on skype (you got the name in my profile info), i have 1 light/medium and 1 heavy bomber there, I will be glad to train you.
From my little experience I would say, that
for piracy you will need full emp, a snac and TCD.
for anti capital combat, double nova and full EMP, if possible, if not SNAC, TCD and full EMP
for multipurpose combat, 1 or 2 hellfire rockets, full EMP, a SNAC and TCD; however, if you use a three-slot bomber, use double nova and TCD.
The incapacitor torpedo is a little strange though; it is useful to take down freighter and fighter shields, so it would be logical to use it against snubs, however (on a non-three slot bomber) you will then lack a TCD or SNAC -derp.
A possibility is to use one or two hellfire rockets in addition to an Incapacitor - the only problem is both can be CD'd.
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To be honest, I disagree with your idea of multipurpose setup, at least for me, shooting nova at anything lighter than a heavy cruiser is a guaranteed miss, that thing takes forever to start it's engines.
Oh, and shooting dual nova at furballs is FUN, but better warn yer teammates to spam batteries.... nor not.