I haven't been to Minor recently, but I thought a while back I saw Navy Patrols and Order patrols passing each other by. In fact, the Order patrols were scanned for contraband and passed inspection!
I don't think the NPCs are shooting each other, just the player factions. If I'm in error please point it out.
"The thirteen saloons that had lined the one street of Seney had not left a trace. The foundations of the Mansion House hotel stuck up above the ground. The stone was chipped and split by the fire. It was all that was left of the town of Seney. Even the surface had been burned off the ground.
Nick looked at the burned-over stretch of hillside, where he had expected to find the scattered houses of the town and then walked down the railroad track to the bridge over the river. The river was there."